Título
Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes [Dataset]
Otros títulos
Autor(es)
Palabras clave
AAI
POCP
OGRI
minimal standards
taxonomy
Clasificación UNESCO
Fecha de publicación
2024
Editor
Universidad de Salamanca
Resumen
[EN]Evaluation of POCP VS AAI: This is a R script to parse all the results from EzAAI and Bio-PI POCP matrix into summary tables, analyze them and create some plots.
Descripción
# POCP-VS-AAI
Evaluation of POCP VS AAI: This is a R script to parse all the results from EzAAI and Bio-PI POCP matrix into summary tables, analyze them and create some plots.
#Responsable
Raúl Riesco Jarrín (shot89_1000@usal.es)
## Dependencies
The script has been evaluated in R v.4.2.2. It has the following R dependencies:
* dplyr
* tidyr
* vioplot
* ggplot2
* stringr
* car
* xlsx
## How to run it
Download the repository. Open the script "AAI VS POCP.R" with R or Rstudio and change the "path_POCP_AAI" in the second line to the folder with the contents of the repository (it should contain a folder called pocp and aai with all the output files from the comparisons). Once the "path_POCP_AAI" is changed run the script. It should create a folder in the path_POCP_AAI path called results, with the summary files in XLSX and the plots in PDF.
## Additional files in the repository not necessary for the script to run
* Accession table.txt: contains all the NCBI accession numbers of the genomes used in the analysis
* results: this folder contains all the outputs from the script.
URI
DOI
Tabla de contenidos
Main repository: POCP-VS-AAI-main.zip
Readme file: README.txt
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