Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes [Dataset]

Riesco Jarrín, Raúl

doi:10.71636/8nyr-8e85

Título

Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes [Dataset]

dc.contributor.author	Riesco Jarrín, Raúl
dc.date.accessioned	2024-02-21T08:39:41Z
dc.date.available	2024-02-21T08:39:41Z
dc.date.issued	2024
dc.identifier.uri	http://hdl.handle.net/10366/155992
dc.description	# POCP-VS-AAI Evaluation of POCP VS AAI: This is a R script to parse all the results from EzAAI and Bio-PI POCP matrix into summary tables, analyze them and create some plots. #Responsable Raúl Riesco Jarrín (shot89_1000@usal.es) ## Dependencies The script has been evaluated in R v.4.2.2. It has the following R dependencies: * dplyr * tidyr * vioplot * ggplot2 * stringr * car * xlsx ## How to run it Download the repository. Open the script "AAI VS POCP.R" with R or Rstudio and change the "path_POCP_AAI" in the second line to the folder with the contents of the repository (it should contain a folder called pocp and aai with all the output files from the comparisons). Once the "path_POCP_AAI" is changed run the script. It should create a folder in the path_POCP_AAI path called results, with the summary files in XLSX and the plots in PDF. ## Additional files in the repository not necessary for the script to run * Accession table.txt: contains all the NCBI accession numbers of the genomes used in the analysis * results: this folder contains all the outputs from the script.	es_ES
dc.description.abstract	[EN]Evaluation of POCP VS AAI: This is a R script to parse all the results from EzAAI and Bio-PI POCP matrix into summary tables, analyze them and create some plots.	es_ES
dc.description.sponsorship	Universidad de Salamanca	es_ES
dc.description.tableofcontents	Main repository: POCP-VS-AAI-main.zip Readme file: README.txt	es_ES
dc.language.iso	eng	es_ES
dc.publisher	Universidad de Salamanca	es_ES
dc.rights	Atribución-NoComercial 4.0 Internacional	*
dc.rights.uri	http://creativecommons.org/licenses/by-nc/4.0/	*
dc.subject	AAI	es_ES
dc.subject	POCP	es_ES
dc.subject	OGRI	es_ES
dc.subject	minimal standards	es_ES
dc.subject	taxonomy	es_ES
dc.subject.mesh	DNA Barcoding, Taxonomic	*
dc.subject.mesh	Environmental Microbiology	*
dc.title	Update on the proposed minimal standards for the use of genome data for the taxonomy of prokaryotes [Dataset]	es_ES
dc.title.alternative	POCP-VS-AAI repository	es_ES
dc.type	info:eu-repo/semantics/other	es_ES
dc.subject.unesco	2414 Microbiología	es_ES
dc.identifier.doi	10.71636/8nyr-8e85
dc.relation.projectID	TED2021-131105B-I00	es_ES
dc.relation.projectID	PID2021-124068NB-I00	es_ES
dc.rights.accessRights	info:eu-repo/semantics/openAccess	es_ES
dc.type.hasVersion	info:eu-repo/semantics/publishedVersion	es_ES
dc.subject.decs	código de barras de ADN taxonómico	*
dc.subject.decs	microbiología ambiental	*
dc.publication.year	2024-02-20